The blog post below refers to a procedure employed with earlier versions of WarpPLS. For a more recent, and less time-consuming, approach see the video linked immediately below. The video shows how to create and use second (and higher) order latent variables with WarpPLS.
http://youtu.be/bkO6YoRK8Zg
***
The YouTube videos below have been created by WarpPLS user and blog commenter Jaime León. They illustrate how steps 1 and 2, described in this post, can be implemented in WarpPLS. The goal of those steps is to use second order latent variables (LVs) in an SEM analysis. Latent variable (LV) scores are generated, saved, and then used in a subsequent SEM analysis.
Step 1: YouTube video 1.
Step 2: YouTube video 2.
In the first video Jaime includes only LVs in the model, without any links among them, and then runs the SEM analysis. This generates the LV scores for the LVs, which Jaime then saves into a .txt file. The LV scores generated are then combined with indicators from the original dataset.
Note that Jaime does not set the LVs in the first video as formative before generating the scores. That is okay if the LVs are reflective; that is, if the indicators of the LVs are highly correlated. (In reflective LVs the loadings are expected to be all high, ideally greater than .7, and significant.) If not, then the LVs should be set as formative.
Also, note that Jaime combined the LV scores in standardized format with indicator data from the original dataset, which were not standardized. That is fine because WarpPLS always standardizes the raw data before proceeding to an SEM analysis. Standardized data, when used as input, will not be affected by standardization (since they are already standardized).
In the second video Jaime creates a model with new LVs, some of which include the previously generated LV scores as indicators. These are frequently referred to as second order LVs. (Although sometimes the original LVs, shown in the first video, are the ones called second order LVs.) Jaime then builds a model by creating several direct links among the LVs.
Cool example, with a Bob Marley song in the background; thanks Jaime!